Additional file 2: Table S1 Running time using different parameters. Table S2 Comparison of LD statistics in different software. Table S3 Simulated genotypes for comparison of different software.
Estimation of contemporary effective population size (Ne) from linkage disequilibrium (LD) between unlinked pairs of genetic markers has become an important tool in the field of population and conserv
Note: VD = the pairwise variance, L = 95% critical value; awith the same MLST type as one individual; the data of the non-Chinese isolates came from a recently published paper [31].
