GSVC/A metagenomic catalogue of the global swine gut virome uncovers ecological principles governing phage-bacteria interactions

This Zenodo deposit accompanies the Global Swine Virome Catalogue (GSVC) manuscript. It provides large files that are not hosted on GitHub, including: (1) FINAL_all_projects_Count_matrix.zip — vOTU-by-sample read count matrix (CoverM) for 5,064 pig gut metagenomes; (2) high_quality_viral.Final.fasta.gz and medium_quality_viral.Final.fasta.gz — representative vOTU genomes (high-quality: ≥90% complete; medium-quality: 50–90% complete); (3) high_quality_Host_prediction_to_genome_m90.csv — iPHoP host predictions at genome level (medium confidence and above); (4) CRISPR_MAGs_01–10.tar.gz — dereplicated bacterial metagenome-assembled genomes (MAGs) used for CRISPR spacer-based host–virus linking. The GSVC comprises 224,605 vOTUs derived from 5,064 metagenomes across 25 countries and 82 locations. Analysis scripts and pre-processed summary tables are available at the companion GitHub repository.