Additional file 2 of Transposable elements that have recently been mobile in the human genome

Additional file 2: Supplementary Table 1. Source datasets used for polymorphic indel dataset generation. Supplementary Table 2. Manual verification of pMEDs reported in van de Lagemaat et. al. (2005) & list of current assemblies used for verification on the UCSC Genome Browser. Supplementary Table 3. Full list of TE subfamilies with human specific instances and their associated statistics. Supplementary Table 4. Full list of pMEIs identified from RMSs. Supplementary Table 5. LTR5_Hs pMEI consensus sequence. Supplementary Table 6. Genes analysed for pMEI and ASE correlation. Supplementary Table 7. Comparison of our RMS to frequency ranked lists from published pMEI datasets. Supplementary Table 8. Disease associated TE subfamilies and their hg19 remapping. Supplementary Table 9. Cell lines used in the study. Supplementary Table 10. Primers and oligos used in the study. Supplementary Table 11. Underlying DNA sequences of pMEIs and non-pMEI TE used for alignment.