Additional file 1 of Genomic insight into the origin, domestication, dispersal, diversification and human selection of Tartary buckwheat

Additional file 1: Table S1. Summary of the 567 Tartary buckwheat accessions and 7 outgroup accessions used in this study with the mapping rate, depth and coverage. Table S2. Distribution of SNPs into various genomic regions in Tartary buckwheat. Table S3. Statistical differences between pairwise FST values between the different populations. Table S4. Genomic fragments with evidence for introgression based on Fd and FdM.Table S5. Interpopulation introgression based on D- statistics. Table S6. Putative selective sweeps between HW and SL based on XP-CLR analysis. Table S7. Putative selective sweeps between HW and NL based on XP-CLR analysis.Table S8. Genes in selective sweeps in both between HW and SL and between HW and NL based on XP-CLR analysis. Table S9. Putative selective sweeps between HW and SL based on DCMS analysis. Table S10. Putative selective sweeps between HW and NL based on DCMS analysis. Table S11. Genes in selective sweeps in both between HW and SL and between HW and NL based on DCMS analysis. Table S12. Candidate genes associated with disease index identified by GWAS with MAF >= 0.01. Table S13. Putative selective sweeps between SL and NL based on XP-CLR. Table S14. Putative selective sweeps between SL and NL based on DCMS. Table S15. Salt tolerance of Tartary buckwheat accessions. Table S16. Candidate genes associated with salt tolerance identified by GWAS. Table S17. Sequencing reads used for assembly of EDT. Table S18. Assembly statistics of the EDT genome. Table S19. BUSCO analysis of the EDT genome. Table S20. Genetic differences between EDT and DDT. Table S21. The expression of genes with insertions and deletions within the QTL inverval. Table S22. Summary of FtXIP insertion promoter cis-acting elements prediction in 1,400 bp region. Table S23. Primers used in this study.