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GenBank Contamination

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Figshare2020-03-17 更新2026-04-28 收录
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https://figshare.com/articles/dataset/GenBank_Contamination/11994579
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Contamination prediction for GenBank (Dec 2018) by conterminator (https://github.com/martin-steinegger/conterminator).The predictions are TSV formated. The following is the column defintion:1.) Numeric identifier2.) Contaminated identifier3.) Kingdom (0: Bacteria&Archaea, 1: Fungi, 2: Metazoa, 3: Viridiplantae, 4: Other Eukaryotes)4.) Species name5.) Alignment start6.) Alignment end7.) Corrected contig length8.) Identifier of the longest contaminating sequence9.) Kingdom of the longest contaminating sequence10.) Species name of the longest contaminating sequence11.) Length of the longest contaminating sequence12.) Count how often sequences from contaminating kingdom alignContaminated identifiers can occur multiple times if multiple alignments were detected.
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2020-03-17
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