Metabarcoding lemur diet dataset two - ZBJ COI primer set
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These datasets are associated with the paper titled "Exploratory analysis reveals arthropod consumption in ten lemur species using DNA metabarcoding" accepted in the American Journal of Primatology. <br>Each dataset contains paired .fastq files for 192 samples <br>These data were generated by sequencing faecal samples from lemurs (sampled following all correct protocols - see paper) and detecting arthropod DNA in their diet. <br>We generated the sequences in this dataset by extracting total DNA from faecal samples collected from various lemur species. PCRs were then conducted using two primer sets. <br>Dataset one contains the amplicons generated using primers we coded "Ber-Luthien", sequences from Cuff et al 2020 (Ecological Entomology, doi.org/10.1111/een.12957) which targets a 312bp region of arthropod COI <br>Dataset two contains the amplicons generated using primers we coded "ZBJ", sequences from Zeale et al 2010 (Molecular ecology resources, doi.org/10.1111/j.1755-0998.2010.02920.x) which targets a different region of the arthropod COI gene and generates a shorter fragment (157bp)<br>All amplicons were pooled and sequencing using Illumina MiSeq (250bp PE)<br>The sample ID (AKR#) and the corresponding lemur species from which the lemur faecal sample was analysed can be found in the file SampleInfo.xlsx<br>Data was analysed using the mBRAVE platform (www.mbrave.net)<br><br>
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figshare
创建时间:
2021-01-18



