Minimal reproducibility package for the Ficus gasparriniana chloroplast genome manuscript: scripts, standardized GenBank records, and validation plastome

This deposit contains the minimal reproducibility package accompanying the manuscript"Complete chloroplast genome of Ficus gasparriniana (Moraceae): genome structure,candidate marker discovery, and plastid phylogenetic placement." Contents:- scripts/: in-house R and Python scripts used for read-depth summarization (200-bp window coverage calculation) and sliding-window nucleotide diversity (Pi) analysis.- standardized_genbank_records_v2/: six standardized GenBank records with self-BLAST-verified repeat_region annotations, used for inverted-repeat boundary comparison (IRscope) in the manuscript.- validation_plastome_SRR13279556/: the independently assembled chloroplast genome (GenBank and FASTA format) from public resequencing data (NCBI SRA: SRR13279556), used as a cross-validation reference for the newly sequenced F. gasparriniana plastome. See README.md and file_manifest.tsv for a full file listing, andchecksums_sha256.txt for integrity verification.