Additional file 3 of Functional genomics of a Spiroplasma associated with the carmine cochineals Dactylopius coccus and Dactylopius opuntiae

Additional file 3: . Data set 2. General genome annotation and differential expression data of S. ixodetis from Dactylopius. DCF, DCM and DO sheets show all the annotations obtained from different programs and databases (i.e., Prokka, CAZyDB, COG, KEGG, NCBI-PGAP) of each genome. PlasmidLikeScaffolds sheet shows the gene features of putative plasmid-like sequences in DO, DCF and DCM genomes. COGCarbohydratemetabolism and COGAminoacidMetabolism sheets show the number of genes in each COG category annotated in DCF, DCM, DO genomes, and other 30 Spiroplasma spp. from the NCBI Genome database for the Carbohydrate transport and metabolism and Amino acid transport and metabolism categories, respectively. DifferentialExpressedGenes sheet show all the log2FoldChange, p-values, p-adjust values, and annotations of S. ixodetis DCF differential expressed genes in the gut, ovary and hemolymph tissues. Columns show the values of the different pair comparisons (i.e., gut vs hemolymph, gut vs ovary and hemolymph vs ovary). Expre.Values.w.AnnotationDCF shows all the DESeq2 results including the normalized expression as fragments per kilobase of transcript per million mapped reads (FPKM) values for each transcriptomic comparison and the annotation of all S. ixodetis DCF genes recovered.