Table_S8_DeltaSVM.robj

We report GVATdb (Yan et al., 2021) results for each eQTL using their fine-mapped variants with causal PP file:////Users/jennifernguyen/Library/Group Containers/UBF8T346G9.Office/TemporaryItems/msohtmlclip/clip_image002.png 10%. The table provides: the eQTL ID (the first term indicates the discovery order and the second term indicates the transcript ID); SNP ID; effect size of the variant on gene expression or isoform usage (“beta”); PP of the variant being causal (“SNP.PP”); name of transcription factor (TF) being tested for binding effects; TF binding score for reference and alternate alleles (“allele1_bind” and “allele2_bind”, respectively); a label (“yes” or “no”) indicating whether the TF binds to the SNP; TF binding impact score (“deltaSVM_score”); and a label (“Gain”, “Loss”, or “None”) indicating whether the SNP promotes (“Gain”) , disrupts (“Loss”), or has no effect on TF binding (“None”). Tables for egQTLs (key name: “gene”) and eiQTLs (key name: “isoform”) are available as an R list object.