16S phylogeny of 40 Agrobacterium spp.
收藏DataCite Commons2021-10-11 更新2024-07-28 收录
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https://figshare.com/articles/dataset/16S_phylogeny_of_40_Agrobacterium_spp_/14792148/1
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资源简介：
We searched the 16S rRNA sequences in 40 Agrobacterium spp. genomes using BLASTN, extracted them using a custom Python script and then aligned with ClustalOmega. A ML phylogeny was then inferred based on these alignments with RAxML-NG 1.0.0 with the options ‘--model GTR+G4 --all’, implying the use of the model GTR+FO+G4m, and that 20 independent inferences were run, starting with 10 random trees and 10 parsimony-optimized tree, and retaining the the best ML tree from these 20 inferences. Branch supports were estimated with 200 Felsentein bootstrap trees.<br>
提供机构：
figshare
创建时间：
2021-08-06
