Additional file 4 of Alternative transcription start sites contribute to acute-stress-induced transcriptome response in human skeletal muscle

Additional file 4. Table S3. Individual muscle promoters and pseudo promoters. Individual promoter was defined as regions in which open chromatin is located 200 bp or less from the CAGE TSS cluster Open – open chromatin near the CAGE TSS cluster. Other CAGE TSS clusters separated by 200 bp or less were grouped and defined as pseudo promoters and divided on promoters with removed (Closed200) and without (Closed2000) open chromatin. Closed200 – closed chromatin –200 bp to +200 bp and open chromatin –2,000 bp to –200 bp and/or +200 bp to +2,000 bp; Closed2000 – closed chromatin –2,000 bp to +2,000 bp). DEP and DEG – differentially expressed promoter and gene, respectively. Protein isoforms shows genes having at least 2 alternative start-codons.