Additional file 1 of Comparative gene expression profiling between optic nerve and spinal cord injury in Xenopus laevis reveals a core set of genes inherent in successful regeneration of vertebrate central nervous system axons

Additional file 1. Cuffdiff2 differential expression data. Tabs are for each injury condition and time point vs. their relevant controls (N = 3 biological replicates, each). Tabs PW1–3) Tadpole spinal cord injury (SCI) hindbrain vs. age-matched, unoperated control hindbrain at 3 days, 1 week, and 3 weeks, respectively; PW4–6) Juvenile frog SCI hindbrain at 3 days, 1 week, and 3 weeks vs. unoperated control hindbrain; PW7–9) juvenile frog optic nerve crush (ONC) eye vs. the contralateral unoperated eye at 3 days, 11 days, and 3 weeks, respectively. Abbreviations: chr, chromosome; cntrl, control; FPKM, fragments per kilobase of transcript per million mapped reads; ONC, optic nerve crush; p, the calculated probability for a single given gene that the observed difference represented no change in expression (i.e., log2(fold change) = 0); q, false discovery rate-adjusted (FDR) p-value [14]; significant, “yes” if q