Additional file 1 of Genome-Wide Association Study (GWAS) to Identify Salt-Tolerance QTLs Carrying Novel Candidate Genes in Rice During Early Vegetative Stage

Additional file 1: Table S1. Rice varieties used in this study. Table S2. Analysis of variance for the studied traits in germplasm set of rice under normal and salinity stress conditions. Table S3. Pearson correlation coefficients between different traits under normal condition. Table S4. Pearson correlation coefficients between different traits under salinity condition. Table S5. Co-ancestory coefficients (Q) in 4 sub-populations for germplasm set used in the study. Table S6. Results of association mapping using MLM-Q-K model for detection of SNPs with significant association to the studied traits under normal condition. Table S7. Results of association mapping using MLM-Q-K model for detection of SNPs with significant association to the studied traits under salinity condition. Table S8. Approximate expression levels of candidate genes (in view of transcript per million, TPM) inferred from EST sources in Unigene database. Table S9. Haplotype analysis of candidate genes on rice chromosomes. Table S10. Co-expression analysis of candidate genes using riceFREND database. Table S11. Comparison of the locations of the detected genomic regions in this study (QTLs) and the known reported QTLs.