Additional file 6 of A chromosome-level genome assembly of a model conifer plant, the Japanese cedar, Cryptomeria japonica D. Don

Supplementary Material 6: Table 2. Gene evidence table. Gene ID: A unique identifier for each gene within SUGI genome annotation version 1; Standard Gene Set: The boolean attribute indicates whether the gene is a part of the standard gene set; PASA Overlap: Denotes the presence of overlapping transcripts from PASA [47, 49], implying that gene authenticity is supported by RNA-seq evidence; Ortholog: Indicates whether there is homology to proteins in other species (UniprotKB, NCBI RefSeq, and Viridiplantae of OrthoDB v10; Not Entirely Masked Sequence: Reveals if the gene sequence is unambiguously distinct from repeat elements; TEsorter Hit: Suggests whether the gene contains sequences that may be derived from transposable elements, as identified by TEsorter version 1.3 using the following options (with database): -db rexdb-plant -dp2 (Viridiplantae v3.0 of REXdb). TESorter was run with the -dp2 option to identify genes that are highly likely to be retrotransposons.