Supplementary files of "Genome-wide comparison of DNA methylation patterns between yak and three cattle strains and their potential association with mRNA transcription"

<strong>Figure and table captions:</strong> <br> <strong>Figure S1.</strong> Relationship between methylation level and gene density (a) or repeat density (b). <strong>Figure S2.</strong> PCA analysis on CpG island, promoter and repeat density. <strong>Figure S3</strong>. Ratio of observed CpG to evaluated CpG across the genomes. <strong>Figure S4</strong>. Venn diagram of differentially methylated genes. <strong>Figure S5</strong>. Ratios of negatively to positively correlated gene pairs. <br> <strong>Table S1</strong>. Data production of samples. <strong>Table S2.</strong> Average methylation level of each sample. <strong>Table S3.</strong> Gene expression in each sample and Differentially expressed gene in each comparison group. <strong>Table S4.</strong> Number of B-SMRs and T-SMRs. <strong>Table S5.</strong> Details of T-SMRs in each species/breed. <strong>Table S6</strong>. Details of B-SMRs in each tissue. <strong>Table S7</strong>. Enriched KEGG terms of T-SMRs and B-SMRs.