Supplementary data for Esterman et al (2020)

This dataset contains supplementary data for the bioinformatic analyses presented in:<br><br>Emma Esterman, Yuri I. Wolf, Roman Kogay, Eugene V. Koonin, and Olga Zhaxybayeva, “Phylogenetic evidence of headful packaging strategy in gene transfer agents” (under review)<br><br><b>File Descriptions:</b><br><br><b>254382_acc.zip:</b> GenBank accession numbers of the RcGTA TerL protein homologs that are taxonomically assigned to bacteria, archaea, or viruses and likely include both an ATPase (N terminal) and nuclease (C terminal) domains.<br><br><b>11051_tree_acc.zip: </b>GenBank accession numbers of amino acid sequences used for reconstruction of the tree shown in Figure 1.<br><br><b>252614_acc.zip:</b> GenBank accession numbers of the RcGTA TerL protein homologs that are represented by 11,051 TerLs on the phylogenetic tree.<br><br><b>terminase_alignment.zip:</b> Alignment of 11,051 amino acid sequences of terminases. The alignment is in FASTA format.<br><br><b>terminase_alignment.trimmed.zip:</b> Alignment of 11,051 amino acid sequences of TerLs, trimmed to remove all sites with more than 50% gaps and less than 10% amino acid similarity. The alignment is in FASTA format.<br><br><b>Figure1_tree.zip: </b>Phylogenetic tree of 11,051 terLs shown in Figure 1 in NEWICK format. aLRT support values are included as node labels.<br><b>terL_subtree_aligned.zip: </b>Alignment of 616 amino acid sequences of TerLs used to detect sites differentiating viruses and RcGTA-like proteins. The 616 TerLs are from the subtree shown on Figure 2. The alignment is in FASTA format.<br><b>IQ-Tree_Alignments.zip:</b> Alignments of 342 and 346 amino acid sequences of TerLs used to validate obtained phylogenetic patterns via IQ-TREE. The alignments are in FASTA format.<br><b>IQ-TREE_trees.zip:</b> Phylogenetic trees of 342 and 346 TerLs reconstructed in IQ-TREE. The trees are in NEWICK format. Ultrafast bootstrap support values are included as node labels.<br><br>