Data and Analysis Files Repository: Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics

Data and Analysis Files from "Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics" ArraySeq_Method.zip contains the following folder and contents: STARSolo: All code and count matrix output from fastq spatial barcode demultiplexing. Images: All resolution-downsampled H&E image scans from analyzed tissues Space_Ranger: All 10x Space Ranger output from Visium datasets generated in the paper. Analysis: All scripts for analyzing and plotting Array-seq and Visium datasets generated in this paper. Also contains output h5ad files. ArraySeq_Barcode_generation_n12.rmd: The script used to generate the Array-seq probes with 12-mer spatial barcodes.