Descriptive statistics for Illumina NGS from experimentally CHIKV-infected Ae. aegypti mosquito bodies and saliva from Los Angeles, California.

Exp = replicate experiment number; % covered = percent of reference genome covered by >200 reads; mean depth = mean depth of sequencing coverage across the genome; SE = Shannon entropy; pi = nucleotide diversity; SNV count = number of SNVs identified by variant caller; n/a = not applicable; pY = plasmid DNA; pY_PCR = plasmid DNA with PCR; IVT = in vitro transcribed RNA.