Samples metadata and listing.

The NCBI SSR-ID, bioproject, biosample, and source are indicated for each sample. When available, the latitude and longitude are specified. NA, information not available. The QC column indicates whether samples have successfully passed the quality control (QC) and are included in the final dataset for analyses. For samples that did not pass the QC, the reasons are outlined in the "Reasons_QC" column as follows: "Missing data" for samples with >50% missing data, "Low Fws" for samples removed due to multi-clonal infections, and "High IBD" for samples that are related to those kept in the analysis dataset. For additional details, please refer to the Materials and Methods section and S2 Fig. (XLSX)