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Supplement 1. Software implementation of Streambugs 1.0 in R.

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Figshare2016-08-09 更新2026-04-29 收录
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File List streambugs.rar - Archive containing all files and folders (md5: 3f68495fd06dc17a8b046fd80f5abaf6) Main folder: define_and_draw_parametersample.r (md5: d9189de074fb0d296cafb50edab1a328) envpar_MA.r (md5: a77014966cbfefc81dde4f4c6af8eff6) inverts_MA_allsitesanddates.r (md5: a907086552b6e650d713b5620afb7487) model_inputs_catchment.r (md5: 9d06d4b0a9c6d74cc58db99833daa2d3) sourcepool_taxa.r (md5: d5ca104637672604c0b0016acb22df43) /databases/ read_currentpref.r (md5: 159ee84eb1b37fff1c7d7a513cdcf96d) read_microhabitatpref.r (md5: 6251987fcd4c02441484efeab9f1d02a) /libraries/ check_survival.r (md5: ed164799933dea3c05cbaa82a42407c5) generate_pars_samp.r (md5: 3491492da3b99ad067c097e7e7128497) get_parameters_environmental_traits.r (md5: 72aa8bef16fc1de944e88b8233e0eb25) randsamp.r (md5: 05f154b95d77724cb1dea022a5e39d76) rhs_benthos.r (md5: eee511d81128fc63d16cae39aebff9f6) stoichcalc_function.r (md5: feea27796c0794fa1dc8b06af3f51a15) /MA167/ execute_model.r (md5: 469da77a9aca1d696df63c2ce2b538bc) model_inputs_site.r (md5: 420da60cabf341de99fc6a85ab13d663) /MA168/ execute_model.r (md5: 469da77a9aca1d696df63c2ce2b538bc) model_inputs_site.r (md5: 387270564369c11b0ba9c071ba7852b8) /MA437/ execute_model.r (md5: 469da77a9aca1d696df63c2ce2b538bc) model_inputs_site.r (md5: 4902b0b6d7a5cc48adf34f9b7b87a441) /MA438/ execute_model.r (md5: 469da77a9aca1d696df63c2ce2b538bc) model_inputs_site.r (md5: 9b9fe02be321030280814799d7eb5d9e) Description The model Streambugs 1.0 was implemented with the statistics and graphics software R (r-project.org). To run the model, the following steps have to be carried out: Generate sample with universal parameters Execute define_and_draw_parametersample.r from the main folder. Run the model for the four sites: Execute execute_model.r from /MA167, /MA168, /MA437, and /MA438. Results will be written to /results. Access to the databases used in the model: freshwaterecology.info: freshwaterecology.info/conditions.php Schmidt-Kloiber, A. and D. Hering, Editors. 2012. freshwaterecology.info - the taxa and autecology database for freshwater organisms, version 5.0 (accessed on 02/2011: version 4.0/2009). CASiMiR: Contact Ianina Kopecki, Institute of Hydraulic Engineering, University of Stuttgart IWS (2002): Strömungspräferenzen für Benthosorganismen auf der Basis von FST-Halbkugeln, Microsoft Access-Datenbank. Universität Stuttgart, Institut für Wasserbau) SPEAR: systemecology.eu/SPEAR, Contact Matthias Liess, Department System Ecotoxicology, UFZ - Helmholtz Centre for Environmental Research.
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2016-08-09
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