Collaborative Cross and Diversity Outbred liver proteomics manuscript

This repository contains:1. Starting peptide data, R scripts to process them, and the resulting quantitative protein data2. R scripts to process the genetic data for the Collaborative Cross and Diversity Outbred mice for further analysis (e.g., QTL, mediation, heritability)3. R scripts to run all analyses reported in manuscript4. Results data5. R scripts to reproduce all figures in manuscript6. Summary tables (supplemental tables attached to the associated manuscript)