Rapid radiations outweigh reticulations during the evolution of a 750-million-year-old lineage of cyanobacteria

This is the genomic and phylogenetic data used and generated in our study on Nostoc evolution and species boundaries. It contains the sequence data, alignments, and tree files from our phylogenomic analyses and the raw outputs from the analyses of phylogenetic conflict., , , # Data from: Rapid radiations outweigh reticulations during the evolution of a 750-million-year-old lineage of cyanobacteria

This repository contains the genomic and phylogenetic data that we used in our study on *Nostoc* evolution and species boundaries. Both archives contain directories in the structure that I used during the computational analyses as documented in the code for this project (available from [GitHub](https://github.com/cjpardodelahoz/nostoc)). Below is a detailed description of the contents of the two files.

## Genomes

The `cyano_genomes.zip` archive contains three directories with two different versions of the genomes we used in the study:

* `set103/` contains the fasta files for the 151 genomes that we used for phylogenetic analyses. In this version of the files the genomes are not sorted by putative chromosome or putative plasmid. Rather, all the genomic content is a single fasta. The `label_key.csv` contains a key linking the file names with the taxa that they c...,