Substrate protein dataset for in silico digestion and microbial screening

Dataset of Fish Substrate Proteins used in VALORISH project General Information This repository contains a curated collection of protein sequences related to Fish substrates. The datasets have been compiled from multiple publicly available sources and filtered for relevance. Datasets Included Fish protein substrates Description: Reference protein sequences used as substrates for computational proteolysis and bioactive peptide prediction analyses. Sources & Licensing: UniProt: Creative Commons Attribution 4.0 International [CC BY 4.0](https://www.uniprot.org/help/license) UniRef: Distributed by UniProt under the Creative Commons Attribution 4.0 International (CC BY 4.0) license. GenBank (NCBI): Publicly available sequence repository maintained by the National Center for Biotechnology Information. File structure: fish_substrate_proteins_annotation_v1.csv: tabular annotation containing protein identifiers, names, species, source database, and additional metadata. fish_substrate_proteins_annotation_v1.fasta: Reference FASTA file containing the amino acid sequences of all protein substrates included in the dataset. Usage and Attribution This dataset is freely available under CC BY 4.0, respecting the original data sources' licensing terms. If you use this dataset, please cite: UniProt: The UniProt Consortium (2024). Nucleic Acids Research, 52(D1), D1–D10. https://doi.org/10.1093/nar/gky1049 UniRef: Baris E Suzek, Hongzhan Huang, Peter McGarvey, Raja Mazumder, Cathy H Wu. (2007) UniRef: comprehensive and non-redundant UniProt reference clusters. https://doi.org/10.1093/bioinformatics/btm098. GenBank: Eric W Sayers , Mark Cavanaugh , Linda Frisse , Kim D Pruitt , Valerie A Schneider , Beverly A Underwood , Linda Yankie , Ilene Karsch-Mizrachi. (2024) GenBank 2025 update. https://doi.org/10.1093/nar/gkae1114 These datasets were developed as part of the VALORISH project, which has received funding from the European Union's Horizon Europe Research and Innovation Programme under Grant Agreement No. 101135078. Acknowledgments UniProt, UniRef and GenBank (NCBI) for providing the publicly available data used to compile this dataset, as well as the VALORISH consortium for their contributions to the project. We extend our gratitude to the Horizon Europe programme and the European Union for supporting research and innovation aimed at advancing sustainable and circular bioeconomy solutions through the VALORISH project. Contact Information For inquiries, please contact: 📧 Project Coordinators: Marta Franco de Benito and Akanksha Mishra // Main Researcher: Miguel Cebrián Aldana 🏛️ IDENER.AI - Biotechnology division ✉️ [e-mail] , [e-mail] , [e-mail] Version and Updates Current Versions: 1.0 (Initial release including the complete dataset collection curated) Previous versions: No previous versions for this dataset Last updated: 03/08/2026