Brito et al 2026 (accepted). Regions of low gene expression promote maintenance and adaptation of horizontally acquired genes in yeasts. Communications Biology - NCBI submissions of Nanopore assemblies and BUSCO orthologous lists.

Nanopore assemblies submitted to NCBI:Wickerhamiella versatilis JCM 5958Wickerhamiella domercqiae JCM 9478Starmerella bombicola PYCC 5882Candida incommunis PYCC 4837BUSCO ortholog lists:Wickerhamiella_versatilis_PYCC7102_nanopore_BUSCO.orthologs.tsvWickerhamiella_domercqiae_PYCC3067_nanopore_BUSCO.orthologs.tsvStarmerella_bombicola_PYCC5882_nanopore_BUSCO.orthologs.tsvBUSCO v6.0.0 (Tegenfeldt et al 2025) was run using the saccharomycetes_odb12 lineage dataset (2,319 genes from 75 species; creation date 2025-07-01). Analyses were run in genome mode (euk_genome_aug) with Augustus v3.5.0 (Stanke et al 2008) as the gene predictor. Each assembly was evaluated on the basis of BUSCO genes classified as complete (single-copy or duplicated), fragmented or missing.References:Tegenfeldt F., Kuznetsov D., Manni M., Berkeley M., Zdobnov E.M., Kriventseva E.V. OrthoDB and BUSCO update: annotation of orthologs with wider sampling of genomes. Nucleic Acids Research, Volume 53, Issue D1, 6 January 2025, Pages D516–D522, https://doi.org/10.1093/nar/gkae987Mario Stanke, Mark Diekhans, Robert Baertsch, David Haussler (2008). Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics, 24(5), pages 637–644, doi: 10.1093/bioinformatics/btn013