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Identification of cell-types in Arabidopsis callus

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https://www.ncbi.nlm.nih.gov/sra/SRP427827
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We determined the cell types present in Arabidopsis callus by single-cell RNA-seq with Quartz-Seq2. Overall design: We dissociated Arabidopsis callus generated from hypocotyl explants to single-cell by enzymatic treatment. Single cell was sorted into lysis buffer in each well of a 384-well PCR plate using BD FACS Aria II SORP cell sorter or CellenOne. Sequence library DNA was prepared according to Quartz-Seq2 method. We analyzed the sequence library DNA using NextSeq500. Digital expression matrix was calculated with fastq files.
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2023-09-12
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