Gold Stamp IDs to SRA IDs convertion of the metagenomes of GEMs

A small simple JSON-file containing the mapping from Gold Stamp IDs from the IMG/JGI database to the SRA IDs useable by fastq-dump to download the corresponding metagenomes from NCBI. The GoldIDs are the ones from the Supplemental Table 1 from Nayfach, S., Roux, S., Seshadri, R. et al. A genomic catalog of Earth’s microbiomes. Nat Biotechnol (2020). https://doi.org/10.1038/s41587-020-0718-6, that have been submited to the Short Read Archive. The code used to generate this mapping is available at https://github.com/moritzbuck/jgi2sra_mapper

一个包含从 IMG/JGI 数据库中金质邮票 ID 到可用于通过 fastq-dump 下载相应宏基因组数据的 NCBI SRA ID 映射的小型简单 JSON 文件。金质 ID 来自 Nayfach, S.，Roux, S.，Seshadri, R. 等人撰写的补充表 1（《地球微生物组的基因组目录》），发表于 Nat Biotechnol (2020)。https://doi.org/10.1038/s41587-020-0718-6，这些 ID 已提交至短读档案。用于生成此映射的代码可在 https://github.com/moritzbuck/jgi2sra_mapper 上找到。