Calypte anna (Anna's hummingbird) genome sequencing and assembly, primary haplotype, v1. Calypte anna

The Anna's Hummingbird is a medium-sized hummingbird native to the Americas. This assembly has been produced as part of the G10K-VGP and avian B10K Projects. DNA was collected from from a female, wild caught in Portland, Oregan, USA by Claudio Mello and Pete Lovell. The samples were prepared in the lab of Erich Jarvis, and sequencing was conducted at Pacific Biosciences, Bionano Genomics, 10X Genomics, and Arima Genomics. Genome assembly was conducted by the G10K-VGP group, and in particular by Arang Rhie and Sergey Koren of Adam Phillippy's lab at NIH. Manual curation of chromosomes and other genomic features was conducted by the gEVAL group led by Kerstin Howe at the Sanger Institute, Harris Lewin and Joanna Damas at UC Davis, and the Phillippy Lab.The primary haplotype contains the longest contigs of the Pacbio FALCON unzip assembly, scaffolded with 10X linked reads, Bionano optical maps, and Arima HiC reads, with multiple tools to further separate out haplotypes.Funding was from the different companies that covered sequencing cost, HHMI to Jarvis, and individual grants and awards to the persons listed above. Released from embargo April 29, 2021 in Rhie et al Nature. 2021 7856:737-746 .