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Source data for Extended Data 3: stool bacterial cell density, C. difficile abundance - including raw images and raw counts

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DataCite Commons2020-08-26 更新2024-07-27 收录
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https://figshare.com/articles/Source_data_for_Extended_Data_3_stool_bacterial_cell_density_C_difficile_abundance_-_including_raw_images_and_raw_counts/11343902/1
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These data correspond to Extended Data 3 of VanInsberghe et al. To directly count the cell density in mouse fecal samples, we homogenized stool pellets of known mass, mounted on microscope slides, and stained using FITC.<br>These data include:<br>- All of the raw fluorescence images used for counting cells<br>- "cell_counts.csv" contains all of the raw cell counts from our cell counting scripts (also available on github - https://github.com/polzlab/VanInsberghe_2019_Cdiff_colonization)<br>- "extended_data_3_source.xlsx" contains the C. difficile abundance measurements also included in Extended Data 3, including both the 16S rRNA amplicon sequencing measurements, and the rplP qPCR measurements.
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figshare
创建时间:
2019-12-12
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