Populus trichocarpa breed:Nisqually-1 Raw sequence reads

NIAID Data Ecosystem2026-03-11 收录

植物冷热胁迫响应

多聚腺苷酸化位点图谱

数据链接：

https://www.ncbi.nlm.nih.gov/sra/SRP254501 数据链接链接失效反馈

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PolyAdenylation Site Sequencing of Populus trichocarpa Nisqually-1 under cold and heat stress conditions

创建时间：

2020-05-21

PolyA sites determined using 3′ RACE.

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转录后调控

aLength in nucleotides. Determined from the most common polyA site. The parenthesis shows alternative polyA sites.bLength in nucleotides. The parenthesis shows results from individual experimental rep

Figshare2015-12-02 更新60

Example input for MAPP workflow

RNA结合蛋白

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Small test dataset for MAPP workflow: 5mln reads sampled from two paired-end RNA-seq samples of the GEO record: GSE69656 100 arbitrarily chosen Position Weight Matrices for RNA binding proteins

NIAID Data Ecosystem30

A genome-wide map of polyadenylation sites in primary human breast tissue

乳腺癌基因组学

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We used a modified PAS-Seq protocol to map sites of polyadenylation genome-wide in primary breast tissue. Here, we present a map of breast poly(A)-sites derived from six ER+ tumors, six ER- tumors, an

DataCite Commons2020-10-10 更新30

Genetic and pharmacological evidence for kinetic competition between alternative poly(A) sites in yeast - NNS complex

转录后调控

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PAT-seq approach was used to determine changes to 3'UTR length in yeast upon mutation of NNS subunits Nrd1 (nrd1-5), Nab3 (nab3-11) and Sen1 (sen1-1) compared to wild type cells Overall design: Yeast

NIAID Data Ecosystem40

Digital gene expression and global mapping of polyadenylation sites with PolyA-Seq

多聚腺苷酸化位点图谱

数字基因表达

We describe PolyA-Seq, a strand-specific method for high-throughput sequencing of the 3' ends of polyadenylated transcripts. PolyA-Seq is as accurate for digital gene expression as existing RNA sequen

NIAID Data Ecosystem30

Populus trichocarpa breed:Nisqually-1 Raw sequence reads

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