RNA binding proteins affinity for natural RNA sequences

NIAID Data Ecosystem2026-03-10 收录

RNA结合蛋白亲和力测定

RNA-蛋白质相互作用

数据链接：

https://www.ncbi.nlm.nih.gov/sra/SRP080275 数据链接链接失效反馈

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This study aimed to derive principles behind interactions between RNA-binding proteins (RBPs) and naturally occurring RNA sequences. This was done using natural sequence RNA-bind-N-seq and SHAPE-seq assays.

创建时间：

2017-09-17

Transcriptome-wide mapping of RNA binding sites of the RNA-binding protein Unkempt using iCLIP-seq. Transcriptome-wide mapping of RNA binding sites of the RNA-binding protein Unkempt using iCLIP-seq

RNA-蛋白质相互作用

神经发育调控

iCLIP experiments tomap the RNA binding sites of the RNA-binding protein Unkempt across the transcriptome in SH-SY5Y cells, HeLa cells with ectopic Unk expression and mouse E15 embryonic brain samples

NIAID Data Ecosystem120

eCLIP from HepG2 (ENCSR489ABS)

RNA-蛋白质相互作用

功能基因组学

eCLIP experiment on HepG2 against RBM5 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_E

NIAID Data Ecosystem70

Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA

RNA-蛋白质相互作用

tRNA修饰酶结构

Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD in complex with a 22 nucleotide dsRNA Descriptor: RNA, tRNA-dihydrouridine(20) synthase [NAD(P)+]-like Authors: Bou-nader, C, Pecqueur

Protein Data Bank Japan2024-01-17 更新50

dAKAP1 signaling complexes coordinate local synthesis at the mitochondrial surface

RNA-蛋白质相互作用

mRNA定位

We find that the KH domain of dAKAP1 binds mRNAs encoding proteins required for mitochondrial metabolism total RNA was incubated with purified protein of dAKAP1 KH and Tudor domains (KHT) followed by

NIAID Data Ecosystem70

Quantifying RNA-Protein Interactions Characterizes Recurrent Mutations in RNA Binding Proteins in Cancer. Quantifying RNA-Protein Interactions Characterizes Recurrent Mutations in RNA Binding Proteins in Cancer

RNA-蛋白质相互作用

癌症突变功能

Quantitative criteria to identify proteins as RNA-binding proteins (RBPs) are presently lacking, as are criteria to define RBP “target” RNAs. To address this, an ultraviolet (UV) cross-linking immunop

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RNA binding proteins affinity for natural RNA sequences

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