Motivation: 16S rDNA hypervariable tag sequencing has become the de facto method for accessing microbial diversity. Illumina paired-end sequencing, which produces two separate reads for each DNA fragm
Additional file 2: Supplementary Figure 2. Percentage of sequence reads mapping to the respective reference genome for the top five Bifidobacterium strains classified in the iHMP2 stool sample J00827
Additional file 2 Tables S1 Summary results for 1,000 tests simulating different ploidies and different levels of coverage; Table S2 SRA information and values calculated for downsampled data of Bremi