Alignments of Cricetinae mtDNA sequences and BEAST xml files used in "Biogeographic history of the Late Pleistocene European small hamsters (subfamily Cricetinae)"

This dataset contains DNA sequence alignments and BEAST XMLs required to replicate phylogenetic analyses in Bujalska et al.File: Bujalskaetal_dataset1_cricetinae_mitogenomes.faDescription: Alignment of mitochondrial genome sequences of Cricetinae species obtained in this study and downloaded from NCBI.File: Bujalskaetal_dataset2_Csungorus_mtDNA.faDescription: Alignment of an mtDNA fragment from modern and ancient Cricetiscus sungorus samples, obtained in this study and downloaded from NCBI. The fragment includes cytochrome b, control region, tRNA-Thr, and tRNA-Pro.File: Bujalskaetal_dataset2_BEAST.xmlDescription: BEAST XML file generated using BEAUti, used to infer the phylogeny based on the Bujalskaetal_dataset2_Csungorus_mtDNA.fa alignment (shown in Figure 2).File: Bujalskaetal_dataset3_Nmigratorius_mtDNA.faDescription: Alignment of mtDNA cytochrome b sequences from modern and ancient Nothocricetulus migratorius samples, obtained in this study and downloaded from NCBI.File: Bujalskaetal_dataset3_BEAST.xmlDescription: BEAST XML file generated using BEAUti, used to infer the phylogeny based on the Bujalskaetal_dataset3_Nmigratorius_mtDNA.fa alignment (shown in Figure 3).Code/softwareThe FASTA alignment files can be viewed and edited using a text editor or a DNA alignment editor such as AliView ([https://github.com/AliView/AliView)XML files can be viewed and edited using a text editor. The phylogenies were inferred using BEAST v1.10.5 (https://beast.community/).