hscScore github repository input files
收藏资源简介:
<strong>Summary:</strong> Data and annotation files for input to the hscScore github repository https://github.com/fionahamey/hscScore <strong>File descriptions</strong><strong>:</strong> ensembl_gene_table_81.txt - Table downloaded from http://jul2015.archive.ensembl.org/index.html with gene name, gene ID and gene type information for mouse genes gene_conversion_10x.csv - Table mapping gene name to ensembl ID for 10x genomics single-cell RNA-sequencing data nestorowa_htseq_counts_all_cells_gene_names_renamed.txt - Gene expression counts for cells from Nestorowa et al (2016) (doi: https://doi.org/10.1182/blood-2016-05-716480) table_S3_model_selection_cv_scores.txt - Results of GridSearchCV for https://github.com/fionahamey/hscScore/blob/master/hsc_score_parameter_search.py wilson_HTSEQ_results.txt - HTSeq count results for data from Wilson et al (2015) (https://doi.org/10.1016/j.stem.2015.04.004) wilson_nomo_molo_genes.csv - List of MolO and NoMO genes from Wilson et al (2015) (https://doi.org/10.1016/j.stem.2015.04.004) wilson_rna_seq_hsc_scores.csv - MolO score prediction from Wilson et al (2015) (https://doi.org/10.1016/j.stem.2015.04.004) using random forest classifier



