Data from: Deciphering host-parasitoid interactions and parasitism rates of crop pests using DNA metabarcoding

MiSeq raw sequences of the COI minibarcode from 1113 moth field samples (part 1) This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each moth field samples in triplicate using the MiSeq platform MiSeq reads COI moth samples (part 1).rar MiSeq raw sequences of the COI minibarcode from 1113 moth field samples (part 2) This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each moth field samples in triplicate using the MiSeq platform MiSeq reads COI moth samples (part 2).rar MiSeq raw sequences of the COI minibarcode from 114 DNA dilution test samples This ZIP file contains the FASTQ files of the paired-end reads (R1: reads 1; R2: reads 2) produced for each DNA dilution in triplicate using the MiSeq platform MiSeq reads COI dilution test.zip Preprocess_2steps_forFrogs.sh Shell script for preprocessing of raw sequences (before running Frogs) : From demultiplexed fastq.gz files produced from an Illumina MiSeq amplicon library, this script merges read 1 and read 2 (with flash), then cuts reads from 3' primers (with cutadapt), and collects processed fastq.gz files with a sufficient number of sequences in an archive. Preprocess_2steps_forFrogs_parameters_file_COI.txt This text file contain parameters needed by the shell script "Preprocess_2steps_forFrogs.sh"