Differential protein expression between baseline and week 8 in paired samples from n = 39 patients treated for pulmonary TB.

At a false discovery rate of 10−6, 78 of 1,030 proteins were identified as differentially expressed using the Wilcoxon Signed Rank test (for all 239 proteins with q −4 see Table S3). The intra-subject shifts indicate the number of patients showing up or down-regulation. Also shown are the raw p-value and resulting FDR corrected “q-value”.*Swiss Prot is a large protein sequence database widely used for protein resources.