Results of the replication study.

The table shows only SNPs with a p-value<0.05 in at least one of the sample (p-values<0.01 are bold and underlined; p-values<0.05 are bold; p-values>0.1 are indicated with NS). The Cochran-Mantel-Haenszel tests for stratified tables (CMH-P), and the Breslow-Day (BD-P) homogeneity of odds ratio tests are shown. Bold SNPs are those analyzed in the initial GWAS. Naïve allele frequencies are shown. Talana - All samples: results with ROADTRIPS considering all related cases and controls; Talana - Sub-samples: results with PLINK considering distantly related cases and controls. The latter samples were used in the Continental Italy + Sardinia + Talana merged set.