Commun_Biol_aphelid_datasets

<b>Transcriptome assembly</b>Metatranscriptome of <i>Paraphelidium tribonemae</i> (PRJNA402032) assembled with trinity, cleaned from non-eukaryote sequences using blobtools with the refseq taxonomy affiliation &amp; cleaned from eukaryote contamination with blastp using a custom database with fungi &amp; stramenopiles. 10,669 cleaned peptides predicted with transdecoder and annotated with eggnog-mapper.<br>Version 1.5 contains 10,439 peptides, after removing 230 peptides with high identity (97% to 100%) with <i>Tribonema gayanum</i> RNA-seq (unpublished).<br><b>Phylogenomics</b>3 protein datasets were used to infer the position of <i>Paraphelidium tribonemae</i>. All were previously used for phylogenomic analyses of Opisthokonta and, more specifically, Microsporidia. They are:- SCPD: 93 single-copy protein domains (SCPD) from Torruella et al. 2015 Curr Biol.- BMC: 53 proteins updated from Capella-Gutiérrez et al. 2012 BMC Biol.- GBE: 259 proteins updated from Mikhailov et al. 2017 Genome Biol Evol.<br>Here you can find the concatenated supermatrices 49sp and 36sp; with and without long-branch microsporidians respectively.