SwarmMAP: Swarm Learning for Decentralized Cell Type Annotation in Single Cell Sequencing Data

Data repository for the manuscript Saldanha, Goepp, et al, 2025 "SwarmMAP: Swarm Learning for Decentralized Cell Type Annotation in Single Cell Sequencing Data". Contains all the processed data used in the manuscript, which consists of the following, publically available, raw datasets: Collection Collection reference Suspension type Study reference Download link Number of cells Number of cell types Number of cell subtypes Heart Bleckwehl et al., 2025 single nuclei Chaffin et al., 2022 Chaffin 2022, Singel Cell Portal 560696 (542216) 14 21 Kuppe et al., 2022 Kuppe 2022, CellxGene 189349 (146325) 13 21 Litvinukova et al., 2020 Litvinukova 2020, CellxGene 84953 (79916) 14 21 Reichart et al., 2022 Reichart 2022, CellxGene 361649 (349045) 14 21 Lung Sikkema et al., 2023 single cell Habermann et al., 2020 All Lung Studies 115249 17 24 Travaglini et al., 2020 All Lung Studies 39901 17 24 Grant et al., 2021 All Lung Studies 47301 17 24 Misharin & Budinger, 2018 All Lung Studies 40580 17 24 Breast Reed et al., 2024 single cell Murrow et al., 2022 All Breast Studies 80726 14 22 Nee et al., 2023 All Breast Studies 219239 14 22 Pal et al., 2021 All Breast Studies 116432 14 22 Twigger et al., 2022 All Breast Studies 100168 14 22