Training Data for "From reads to (pseudo) counts : guided step by step exploration" tutorial (Galaxy Training Material)

A sampled subset of reads, used in the 'From Reads to (Pseudo) Counts: Guided Step-by-Step Exploration' GNT tutorial, which covers RNA-seq analysis including:

Qualitative analysis

Quantification of genes and transcripts (counts and pseudo-counts)

Assembly with reference

Local assembly

This subset is extracted from:

Hélène Lopez-Maestre, Lilia Brinza, Camille Marchet, Janice Kielbassa, Sylvère Bastien, Mathilde Boutigny, David Monnin, Adil El Filali, Claudia Marcia Carareto, Cristina Vieira, Franck Picard, Natacha Kremer, Fabrice Vavre, Marie-France Sagot, Vincent Lacroix, SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence, Nucleic Acids Research, Volume 44, Issue 19, 2 November 2016, Page e148, https://doi.org/10.1093/nar/gkw655