Large deletions detected in sequenced dogs.

Location (chr, start, end) and size (length in bp) of large deletions detected in the 160 dog genomes and found to be segregating in at least two of the sequenced individuals. For deletions overlapping genes, gene name (gene_name), ensemble gene id (gene), ensemble transcript id (transcript), gene description (description) and gene ontology terms (GO-annotations) associated with the gene are reported. deletions overlapping conserved elements are flagged as conserved (phastcon) and the highest phastcon lod score within the boundaries of the deletions is reported (phastcon_lod). Average allele frequency of reference (breed_name_A) and deletion (breed_name_B) allele, total number of chromosomes sampled per breed (breed_name_sz) and average pairwise breed differentiation for the deletion (breed_name_fst) is reported for each breed. Total differentiation across the entire sample (total_FST) is also reported for each deletion.
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