Supplementary tables for preprint titled: "TEA-GCN: Constructing Accurate, Species-comparable, and Explainable Gene Regulatory and Functional Networks via Condition-Specific Ensemble Co-expression"

Supplementary table titles are as follows:Table S1. Performance scores of S. cerevisiae non-ensemble PCC GCN, coexpressDB GCN and TEA-GCN across different biological aspectsTable S2. Performance scores of A. thaliana non-ensemble PCC GCN, ATTED-II GCN and TEA-GCN across different biological aspectsTable S3. Performance scores of H. sapiens non-ensemble PCC GCN, coexpressDB GCN and TEA-GCN across different biological aspectsTable S4. Comparison of Met positive edges standardized co-expression strengths from different pathway ontological classes between A. thaliana GCN and ATTED-II GCNTable S5. Performance scores of TEA-GCN constructed from downsampled and batch corrected datasetsTable S6. A. thaliana GRN positive edgesTable S7. GRN-inference performance scores of downsampled A.thaliana TEA-GCNs, GENIE3 GRN and GRNBoost2 GRNTable S8. Lemma annotations of 444 A. thaliana dataset partitionsTable S9. Partition rankings (centralized) of deconvoluted A. thaliana edges-of-interestsTable S10. Experimental Contexts discovered for selected TF positive edgesTable S11. Enrichment statistics of experimental context lemmas of TF positive edges connecting ABI5 and MS188Table S12. S. cerevisiae Met positive edgesTable S13. A. thaliana Met positive edgesTable S14. H. sapiens Met positive edgesTable S15. S. cerevisiae TF positive edgesTable S16. A. thaliana TF positive edgesTable S17. H. sapiens TF positive edgesTable S18. S. cerevisiae GO positive edgesTable S19. A. thaliana GO positive edgesTable S20. H. sapiens GO positive edgesTable S21. Met Positive edges of nine Angiosperm speciesTable S22. S. cerevisiae RNA-seq samples metadata and K-means clustering assignments at different partition granularitiesTable S23. A. thaliana RNA-seq samples metadata and K-means clustering assignments at different partition granularitiesTable S24. H. sapiens RNA-seq samples metadata and K-means clustering assignments at different partition granularitiesTable S25. Creative Commons Attributions for photos used in Figure 7ATable S26. Dataset and TEA-GCN generation information for 9 Angiosperm species