Supplemental Data for "A validated pangenome-scale metabolic model for the <i>Klebsiella pneumoniae </i>species complex."
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<b>Summary</b>This figshare directory contains supplemental data for the publication "A validated pangenome-scale metabolic model for the <i>Klebsiella pneumoniae </i>species complex".DOI: https://doi.org/10.1099/mgen.0.001206The KpSC pan v2 model can be found here: https://github.com/kelwyres/KpSC-pan-metabolic-modelAccess Bactabolize here: https://github.com/kelwyres/Bactabolize_________________________________________________________<b>Supplementary data</b>MEMOTE-Reports.zip contains four MEMOTE reports for each reference model (iYL1228, iKp1289, KpSC pan v1 & KpSC pan v2).Raw-Growth-Assay-Data.zip contains the growth assay data as both summary .xlsx files for each condition, in addition to the raw Tecan OD<sub>600</sub> values._________________________________________________________<b>Strain-specific models</b>iYL1228-strain-specific-models.zip contains strain-specific models generated for 507 isolates. The reaction and gene data for these models are summarised in iYL1228-reaction-presence-absence-matrix.csv and iYL1228-gene-presence-absence-matrix.csv respectively.iKP1289-strain-specific-models.zip contains strain-specific models generated for 507 isolates. The reaction and gene data for these models are summarised in iKp1289-reaction-presence-absence-matrix.csv and iKp1289-gene-presence-absence-matrix.csv respectively.KpSC-pan-v1-strain-specific-models.zip contains strain-specific models generated for 507 isolates. The reaction and gene data for these models are summarised in KpSC-pan-v1-reaction-presence-absence-matrix.csv and KpSC-pan-v1-gene-presence-absence-matrix.csv respectively.KpSC-pan-v2-strain-specific-models.zip contains strain-specific models generated for 507 isolates. The reaction and gene data for these models are summarised in KpSC-pan-v2-reaction-presence-absence-matrix.csv and KpSC-pan-v2-gene-presence-absence-matrix.csv respectively._________________________________________________________<b>Binary data to accompany supplementary tables</b>Binary-Predicted-Growth-Phenotypes-to-accompany-Table-S4.xlsx<b> </b>contains binary growth predictions for each strain-specific model, which were used to inform the data contained in Table S4.Aerobic-Carbon-Model-Predictions-to-accompany-Table-S6.xlsx contains binary aerobic growth phenotype data and accuracy classifications for each strain-specific model, which were used to inform the data contained in Table S6.Anaerobic-Carbon-Model-Predictions-to-accompany-Table-S7.xlsx contains binary anaerobic growth phenotype data and accuracy classifications for each strain-specific model, which were used to inform the data contained in Table S7.
