Immunopeptidome of HEK293.CIITA cells.

S3A-C. HLA-ABC (S3A), HLA-DR immunopeptidome (S3B), and HLA-DP (S3C) immunopeptidomes of OC43-infected cells. S3D. Viral peptides eluted from OC43-infected cells. S3E-G. HLA-ABC (S3E), HLA-DR (S3F), and HLA-DP, (S3G) immunopeptidomes of uninfected cells. For each peptide, mass spectrometry identification parameters are shown (eluted sequence, length, source protein, intensity, Scaffold identification probability, and Mascot Ion and Identity scores). In addition, NetMHCpan 4.1 or NetMHCIIpan 4.0 predictions were performed and predicted core for each relevant allele, score, and rank are shown for each peptide. (XLSX)