HBProphage PeerJ 2023

Bacterial isolates from the honey bee (Apis mellifera) gut were analyzed for the presence of prophages using a combination of phage analysis programs: VirSorter2 (v2.2.2), CheckV (v.0.7.0), and Vibrant (v1.2.1). Proteins were predicted using prokka (v. 1.14.6) and initially functionally annotated using the PHROGS database (https://phrogs.lmge.uca.fr/index.php, downloaded from http://millardlab.org/2021/11/21/phage-annotation-with-phrogs/ on July 20, 2022). Proteins were then additionally annotated using hidden Markov profiles from the eggNOG v5 (http://eggnog5.embl.de) databases. Associated nucleotide/amino acid sequences and functional annotations of prophage predicted in bacterial isolates are included as files here. Associated code is available at github: https://github.com/ebueren/HBProphage_PeerJ This data is associated with "Characterization of prophages in bacterial genomes from the honey bee (Apis mellifera) gut microbiome", currently in review at PeerJ.