Root Phenotyping Data

Dataset presenting the root phenotyping analysis performed in the paper: Bouché F, D’Aloia M, Tocquin P, Lobet G, Detry N, Périlleux C. 2016. Integrating roots into a whole plant network of flowering time genes in Arabidopsis thaliana. Scientific Reports. The dataset contains: - <strong>01-raw_images.zip</strong>: the orignal images of the petri dishes used for the analysis. The scale is 370 DPI - <strong>02-processed_images.zip</strong>: images enhanced, cropped and renamed for the analysis. Analysis was performed using SmartRoot (Lobet et al. 2011). Each image has its corresponding RSML file containing the root architecture data. - <strong>plate_image_treatment.ijm</strong>: ImageJ macro for a pre-processing of the images, before the SmartRoot analysis - <strong>root_architecture_analysis.R</strong>: R script used for the architecture data analysis - <strong>root_architecture_data.csv</strong> : architecture data exported from SmartRoot. - <strong>images.zip</strong>: the plots generated using the R script