GREEN-VARAN SV annotation resources

This dataset contains a collection of BED files prepared to be used with the SV_annotation tool, part of GREEN-VARAN. <strong>GREEN-DB regions</strong> Regulatory regions collected in GREEN-DB (see https://github.com/edg1983/GREEN-VARAN) <strong>Population AF annotations</strong> These files represent SVs from gnomAD v.2.1.1, 1000G phase3, and the IMH dataset. When not directly available, the GRCh38 versions are obtained by coordinates liftover from GRCh37. If you use AF annotations don't forget to cite also the original papers: gnomAD paper as described in https://gnomad.broadinstitute.org/terms 1000G SV paper: https://www.nature.com/articles/nature15394 the original IMH publication https://www.nature.com/articles/s41586-020-2371-0 <strong>Gene annotations</strong> Genes and CDSs annotations are from GENCODE v33 basic set