Replicated radiation of a plant clade along a cloud forest archipelago dataset
收藏资源简介:
Raw data complementary of https://github.com/eaton-lab/Orienotinus-phylogeny repository Assembly output of <em>Oreinotinus </em>species (<em>Viburnum</em>, Adoxaceae) using ipyrad pipeline and morphological matrix: List of files: <code>full_dataset.loci</code> Custom format that shows each individual locus with variable sites indicated. <code>full_dataset.phy </code>Concatenated RAD loci in Phylip format <code>full_dataset.seqs.hdf5</code> Sequences formated as HDF5 file <code>full_dataset.snps</code> Phylip files that includes only variable sites (SNPs) <code>full_dataset.snps.hdf5</code> SNPs formated as HDF5 file <code>full_dataset.snpsmap</code> Information about location (locus) of SNPs <code>full_dataset_stats.txt</code> Statistics about the assembly <code>leaf_traits_measurements.tsv</code> TSV file that contains leaf measurments used in the discriminant analyses. <code>canopy_data.txt</code> Canopy cover data <code>central_plateau_data.txt</code> Macroenvironmental data for the Chiapas central plateau <code>full_distribution.txt</code> Specimen metadata and coordinates for all the points for Oreinotinus distribution <code>leaf_wetness_temp.txt</code> Climate station data for leaf wetness, temperature <code>leaf_traits_measurements.tsv</code> TSV file that contains leaf measurments used in the discriminant analyses. <code>tree_accessions.txt</code> Species-level tree accessions with specimen metadata



