Distribution of samples, phenotyping and genotyping, and concordance between phenotypic and genotypic tropism.
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https://figshare.com/articles/dataset/_Distribution_of_samples_phenotyping_and_genotyping_and_concordance_between_phenotypic_and_genotypic_tropism_/700244
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Distribution of samples per subtype, successful Env PCR amplification, recombinant virus production and sequencing of the V3-loop, and results (concordance and Cohen kappa values) for genotype/phenotype pairs are reported.
N: number of samples. G2P: Geno2Pheno(coreceptor). The percentage following G2P indicates the FPR cut-off. Distribution of samples per subtype, successful Env PCR amplification, recombinant virus production and sequencing of the V3-loop, and results (concordance and Cohen kappa values) for genotype/phenotype pairs are reported.
*For subtype C, concordance was determined and with webPSSM subtype C SINSI. Concordance with webPSSM X4/R5 was 75% and Cohen kappa values were poor (−0.0989 for full agreement and −0.1365 when detection of X4 strains was considered).
创建时间：
2015-12-02
