Supplemental Materials for Yin and Hedgecock, 2021

The file vresubmit-vQTL dataset.xlsx includes all the data (i.e., genotypes, phenotypes, marker information) used in the analysis.<br>The file vresubmit-vQTL SI.xlsx includes supplemental information.<br>Table S1. Three-way contingency analyses of sire × dam haplotype combinations × numbers of markers with identical or non-identical alleles, for all families and chromosomes<br><br>Table S2. Genetic models of vQTL<br><br>Table S3. Transcriptomic representation (RPKM) of candidate genes under vQTL driven by one IBD recessive mutation at different developmental stages<br><br>Figure S1. Example heatmaps of p-values of contingency chi-square tests on PROC QTL-estimated genotype frequencies between markers on a chromosome. The adjusted significance level is adopted to control false discovery rate; yellow indicates positions with LRT above the threshold, blue indicates separate vQTL peaks, red indicates significant p-values, and green indicates nonsignificant p-values.<br>