five

Turnaround time computed using Sequenceserver on SMP server and WImpiBLAST on HPC cluster.

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https://figshare.com/articles/dataset/_Turnaround_time_computed_using_Sequenceserver_on_SMP_server_and_WImpiBLAST_on_HPC_cluster_/1089193
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mpiBLAST achieved the highest speedup in case of sequence 6 where it outperforms NCBI BLAST+ by roughly 38 times but on average mpiBLAST performed 16 times faster than NCBI BLAST+ for aggregate run times of all queries. (No. of aligned Sequences = 1; No. of sequences = 12; Type: Nucleotide; Average base pair length: 2389; Query sequences file: ss1_Table_4_and_5_Sequences.fasta (Text S4); Search database: In-house large nucleotide database (size = 246 GB after formatting)).
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2014-06-30
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